Naoto Hori

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Major conferences

22. July 2021  The Nucleic Acids Forum 2021 (The Royal Society of Chemistry)   [Online]
    Mg²⁺-induced folding of functional RNA molecules studied by coarse-grained molecular simulations    
    ○Naoto Hori
    
    
21. May 2021  The 26th Annual Meeting of the RNA Society   [Online]
    Cooperativity in Mg²⁺-induced folding of the central domain of 16S rRNA studied by coarse-grained molecular simulations    
    ○Naoto Hori, Natalia A. Denesyuk, and D Thirumalai
    
    
20. May 2020  The 25th Annual Meeting of the RNA Society   [Online]
    Kinetics and thermodynamics of Mg²⁺-induced folding of Azoarcus ribozyme revealed by molecular simulations   
    ○Naoto Hori, Natalia A. Denesyuk, and D Thirumalai
    
    
19. Feb. 2017  Biophysical Society 61th Annual Meeting   [New Orleans, US]
    Multistep folding kinetics of group I intron RNA studied by Mg²⁺-concentration jump simulations   [Abstruct]
    ○Naoto Hori, Natalia A. Denesyuk, and D Thirumalai
    
    
18. Mar. 2016  Biophysical Society 60th Annual Meeting   [Los Angeles, US]
    Mechanical force and salt effects on the thermodynamics of a frameshifting RNA pseudoknot.    [Abstruct]
    ○Naoto Hori, Natalia A. Denesyuk, and D Thirumalai
    
    
17. Nov. 2013  The 49th Annual Meeting of the Biophysical Society of Japan  [Kyoto, Japan]
    Molecular simulation study on signaling control in yeast MAPK pathway
    ○Naoto Hori and Shoji Takada
    
    
16. Feb. 2013  Biophysical Society 57th Annual Meeting   [Pennsylvania, US]
    Molecular dynamics of tRNA bound to translating ribosome studied by coarse-grained simulations
    ○Naoto Hori and Shoji Takada
    
    
15. Sep. 2012  The 50th Annual Meeting of the Biophysical Society of Japan  [Nagoya, Japan]
    Dynamical motions of tRNA and ribosome complex during translation elongation studied by coarse-grained molecular simulations   
    ○Naoto Hori and Shoji Takada
    
    
14. Jul. 2012  The 14th Annual Meeting of the RNA Society of Japan  [Sendai, Japan]
    Mechanisms and Relation of Ribosomal Subunit Rotation and tRNA Hybrid State Formation Studied by Molecular Simulations   
    ○Naoto Hori and Shoji Takada
    
    
13. Feb. 2012  Biophysical Society 56th Annual Meeting   [San Diego, US]
    Mechanisms and Relation of Ribosomal Subunit Rotation and tRNA Hybrid State Formation Studied by Molecular Simulations   [Abstruct]
    ○Naoto Hori and Shoji Takada
    
    
12. Jan. 2012  The 5th International Symposium on Molecular Science of Fluctuations toward Biological Functions  [Nara, Japan]
    Fluctuations of Transfer RNAs in the Ribosome Cavity Studied by Coarse-Grained Simulations   
    ○Naoto Hori and Shoji Takada
    
    
11. Sep. 2011  The 49th Annual Meeting of the Biophysical Society of Japan  [Himeji, Japan]
    Coarse-grained molecular simulation study of ribosomal translocation dynamics   CiNii
    ○Naoto Hori and Shoji Takada
    
    
10. Sep. 2011  The 2nd international symposium on "Multi-scale Simulations of Biological and Soft Materials" (MSBSM 2011)  [Kyoto, Japan]
    Coarse-grained model of RNA-protein complexes derived by multiscale simulation method   
    ○Naoto Hori and Shoji Takada
    
    
9. Jun. 2011  The 16th Annual Meeting of the RNA Society  [Kyoto, Japan]
   Ribosome and tRNA Dynamics during Elongation Studied by Coarse-Grained Molecular Simulations   
   ○Naoto Hori and Shoji Takada
   
   
8. Jun. 2011  The 11th Annual Meeting of the Protein Science Society of Japan  [Osaka, Japan]
   Coarse-grained simulation study of ribosome and tRNA dynamics   
   ○Naoto Hori and Shoji Takada
   
   
7. Sep. 2010  The 48th Annual Meeting of the Biophysical Society of Japan  [Sendai, Japan]
   Coarse-grained model of RNA-protein complexes based on all-atom simulations   CiNii
   ○Naoto Hori, Wenfei Li, and Shoji Takada
   
   
6. Jun. 2010  The 10th Annual Meeting of the Protein Science Society of Japan  [Sapporo, Japan]
   Coarse-grained model of RNA-protein complexes based on all-atom simulations 
   ○Naoto Hori, Wenfei Li, and Shoji Takada
   
   
5. Nov. 2009  The 47th Annual Meeting of the Biophysical Society of Japan  [Tokushima, Japan]
   Replica exchange simulations applied for coarse-grained models of giant protein-nucleic acid complex   CiNii
   ○Naoto Hori, Hiroo Kenzaki, and Shoji Takada
   
   
4. Dec. 2007  The 45th Annual Meeting of the Biophysical Society of Japan  [Yokohama, Japan]
   Network and energy landscape of a folding protein revealed by multicanonical fragment assembly simulations   CiNii
   ○Naoto Hori and Shoji Takada
   
   
3. Sep. 2007  The 62th Annual Meeting of the Physical Society of Japan  [Sapporo, Japan]
   Energy landscape of folding proteins revealed by Wang-Landau sampling   CiNii
   ○Naoto Hori and Shoji Takada
   
   
2. Dec. 2006  Discussion on "Theory and Simulation of Biomolecular Nano-machine"  [Maiko, Japan]
   Energy landscape and network of protein folding revealed by large-scale multicanonical fragment assembly simulations 
   ○Naoto Hori and Shoji Takada
   
   
1. Nov. 2006  The 5th East Asian Biophysics Symposium & 44th Annual Meeting of the Biophysical Society of Japan  [Okinawa, Japan]
   Energy landscape of folding proteins revealed by large-scale multicanonical fragment assembly simulations   CiNii
   ○Naoto Hori, George Chikenji, and Shoji Takada

Other Meetings

3. Jul. 2010  The 29th Study Meeting on Theory of Protein and Nucleic Acid Structure  [Tsukuba, Japan]
   A development of coarse-grained simulation model of RNA 
   ○Naoto Hori
   
   
2. Jul. 2009  The 28th Study Meeting on Theory of Protein and Nucleic Acid Structure  [Kobe, Japan]
   A Study on Energy Landscape of Protein Folding 
   ○Naoto Hori
   
   
1. Nov. 2006  CASP7: "7th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction"  [Asilomar, US]
   Template-free Prediction by Fragment Assembly with SimFold Energy Function at CASP7 
   Sung-Joon Park, Naoto Hori, Kei-ichi Okazaki, and Shoji Takada 
   CASP7 Abstracts (2006) 99-101  PDF